Crabtree, H., Observations on the carbohydrate metabolism of tumors. Biochem. J. 23 (1929), 536–545.
Phue, J.-N., Noronha, S., Hattacharyya, R., Wolfe, A., Shiloach, J., Glucose metabolism at high density growth of E. coli B and E. coli K: differences in metabolic pathways are responsible for efficient glucose utilization in E. coli B as determined by microarrays and northern blot analyses. Biotechnol. Bioeng. 90:7 (2005), 805–820.
Vemuri, G., Altman, E., Sangurdekar, D., Khodursky, A., Eiteman, M., Overflow metabolism in Escherichia coli during steady-state growth: transcriptional regulation and effect of the redox ratio. Appl. Environ. Microbiol. 72:5 (2006), 3653–3661.
Luli, G., Strohl, W., Comparison of growth, acetate production, and acetate inhibition of Escherichia coli strains in batch and fed-batch fermentations. Appl. Environ. Microbiol. 56:4 (1990), 1011–1104.
Xu, B., Jahic, M., Blomsten, G., Enfors, S., Glucose overflow metabolism and mixed-acid fermentation in aerobic large-scale fed-batch processes with Escherichia coli. Appl. Microbiol. Biotechnol. 51 (1999), 564–571.
Alba, M., Calvo, E., Characterization of bioreaction processes: aerobic Escherichia coli cultures. J. Biotechnol. 84 (2000), 107–118.
Eiteman, M., Altman, E., Overcoming acetate in Escherichia coli recombinant protein fermentations. Trends Biotechnol. 24:11 (2006), 530–536.
Rocha, I., Model-Based Strategies for Computer-aided Operation of a Recombinant E. coli Fermentation, Ph. D. Thesis. 2003, Universidade do Minho.
Usuda, Y., Nishio, Y., Iwatani, S., Van Dien, S., Imaizumi, A., Shimbo, K., Kageyama, N., Iwahata, D., Miyano, H., Matsui, K., Dynamic modeling of Escherichia coli metabolic and regulatory systems for amino-acid production. J. Biotechnol. 147 (2010), 17–30.
Valgepea, K., Adamberg, K., Nahku, R., Lahtvee, P., Arike, L., Vilu, R., Systems biology approach reveals that overflow metabolism of acetate in Escherichia coli is triggered by carbon catabolite repression of acetyl-CoA synthetase. BMC Syst. Biol., 4(166), 2010, 13.
Sonnleitner, B., Kappeli, O., Growth of S. cerevisiae is controlled by its limited respiratory capacity: formulation and verification of a hypothesis. Biotechnol. Bioeng. 28 (1986), 927–937.
Galvanauskas, V., Simutis, R., Volk, N., Lubbert, A., Model based design of a biochemical cultivation process. Bioprocess Eng. 18 (1998), 227–234.
Cockshott, A., Bogle, I., Modelling the effects of glucose feeding on a recombinant. Bioprocess Eng. 20 (1998), 83–90.
Akesson, M., Karlsson, E., Hagander, P., Axelsson, J., Tocaj, A., Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli w3110. Biotechnol. Bioeng. 64:5 (1999), 590–597.
Dewasme, L., Goffaux, G., Hantson, A.-L., Vande Wouwer, A., Experimental validation of an extended Kalman filter estimating acetate concentration in E. coli cultures. J. Process Control 23 (2013), 148–157.
Cruz-Bournazou, M., Barz, T., Nickel, D., Glauche, F., Knepper, A., Neubauer, P., Online optimal experimental re-design in robotic parallel fed-batch cultivation facilities. Biotechnol. Bioeng. 114 (2017), 610–619.
Anane, E., López Cárdenas, D., Neubauer, P., Cruz-Bournazou, M., Modelling overflow metabolism in Escherichia coli by acetate cycling. Biochem. Eng. J. 125 (2017), 23–30.
Neubauer, P., Haggstrom, L., Enfors, S., Influence of substrate oscillations on acetate formation and growth yield in Escherichia coli glucose limited fed-batch cultivations. Biotechnol. Bioeng. 47 (1995), 139–146.
Paalme, T., Elken, R., Kahru, A., Vanatalu, K., Vilu, R., The growth rate control in Escherichia coli at near to maximum growth rates: the a-stat approach. Antonie Van Leeuwenhoek 71 (1997), 217–230.
Lara, A., Caspeta, L., Gosset, G., Bolivar, F., Ramirez, O., Utility of an Escherichia coli strain engineered in the substrate uptake system for improved culture performance at high glucose and cell concentrations: an alternative to fed-batch cultures. Biotechnol. Bioeng. 99 (2008), 893–901.
Lara, A., Taymaz-Nikerel, H., Mashego, M., van Gulik, W., Heijnen, J., Ramirez, O., van Winden, W., Fast dynamic response of the fermentative metabolism of Escherichia coli to aerobic and anaerobic glucose pulses. Biotechnol. Bioeng. 104 (2009), 1153–1161.
Basan, M., Hui, S., Okano, H., Zhang, Z., Shen, Y., Williamson, J., Hwa, T., Overflow metabolism in Escherichia coli results from efficient proteome allocation. Nature 528 (2015), 99–104.
Dewasme, L., Srinivasan, B., Perrier, M., Vande Wouwer, A., Extremum-seeking algorithm design for fed-batch cultures of microorganisms with overflow metabolism. J. Process Control 21 (2011), 1092–1104.
Santos, L., Dewasme, L., Coutinho, D., Vande Wouwer, A., Nonlinear model predictive control of fed-batch cultures of micro-organisms exhibiting overflow metabolism: assessment and robustness. Comput. Chem. Eng. 39 (2012), 143–151.
Tebbani, S., Dumur, D., Hafidi, G., Vande Wouwer, A., Nonlinear predictive control of fed-batch cultures of Escherichia coli. Chem. Eng. Technol. 33:7 (2010), 1112–1124.
Dewasme, L., Fernandes, S., Amribt, Z., Santos, L., Bogaerts, P., Vande Wouwer, A., State estimation and predictive control of fed-batch cultures of hybridoma cells. J. Process Control 30 (2015), 50–57.
De Jesus Saraiva, I., Vande Wouwer, A., Hantson, A.-L., Parameter identification of a dynamic model of CHO cell cultures. Bioprocess Biosyst. Eng. 38:11 (2015), 2231–2248.
Wang, Y., Wu, S.-L., Hancock, W., Trala, R., Kessler, M., Taylor, A., Patel, P., Aon, J., Proteomic profiling of Escherichia coli proteins under high cell density fed-batch cultivation with overexpression of phosphogluconolactonase. Biotechnol. Prog. 21 (2005), 1401–1411.
Matin, A., The molecular basis of carbon-starvation-induced general resistance in Escherichia coli. Mol. Microbiol. 5 (1991), 3–10.
Siegele, D., Kolter, R., Life after log. J. Bacteriol. 174 (1992), 345–348.
Walter, E., Pronzato, L., Identification of Parametric Models From Experimental Data. 1997, Springer, COUNTRY.