Amann, R.I., Binder, B.J., Olson, R.J., Chisholm, S.W., Devereux, R., Stahl, D.A., Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56:6 (1990), 1919–1925.
Ast, J.C., Cleenwerck, I., Engelbeen, K., Urbanczyk, H., Thompson, F.L., De Vos, P., Dunlap, P.V., Photobacterium kishitanii sp. nov., a luminous marine bacterium symbiotic with deep-sea fishes. Int. J. Syst. Evol. Microbiol. 57:9 (2007), 2073–2078, 10.1099/ijs.0.65153-0.
Barnes, A.T., Case, J.F., The luminescence of lanternfish (Myctophidae): spontaneous activity and responses to mechanical, electrical, and chemical stimulation. J. Exp. Mar. Biol. Ecol. 15:2 (1974), 203–221, 10.1016/0022-0981(74)90046-X.
Boettcher, K.J., Ruby, E.G., Depressed light emission by symbiotic Vibrio fischeri of the sepiolid squid Euprymna scolopes. J. Bacteriol. 172:7 (1990), 3701–3706, 10.1128/jb.172.7.3701-3706.1990.
Case, J.F., Warner, J., Barnes, A.T., Lowenstine, M., Bioluminescence of lantern fish (Myctophidae)in response to changes in light intensity. Nature, 265(5590), 1977, 179, 10.1038/265179a0.
Claes, M.F., Dunlap, P.V., Aposymbiotic culture of the sepiolid squid Euprymna scolopes: role of the symbiotic bacterium Vibrio fischeri in host animal growth, development, and light organ morphogenesis. J. Exp. Zool. 286:3 (2000), 280–296, 10.1002/(SICI)1097-010X(20000215)286:3<280::AID-JEZ7>3.0.CO;2-L.
Claes, J.M., Mallefet, J., Early development of bioluminescence suggests camouflage by counter‐illumination in the velvet belly lantern shark Etmopterus spinax (Squaloidea: Etmopteridae). J. Fish Biol. 73:6 (2008), 1337–1350, 10.1111/j.1095-8649.2008.02006.x.
Claes, J.M., Mallefet, J., Bioluminescence of sharks: first synthesis. Bioluminescence in Focus—A Collection of Illuminating Essays, 2009, Research Signpost, Kerala, 51–65.
Claes, J.M., Mallefet, J., Ontogeny of photophore pattern in the velvet belly lantern shark, Etmopterus spinax. Zoology 112:6 (2009), 433–441, 10.1016/j.zool.2009.02.003.
Claes, J.M., Mallefet, J., Hormonal control of luminescence from lantern shark (Etmopterus spinax)photophores. J. Exp. Biol. 212:22 (2009), 3684–3692, 10.1242/jeb.034363.
Claes, J.M., Mallefet, J., Functional physiology of lantern shark (Etmopterus spinax)luminescent pattern: differential hormonal regulation of luminous zones. J. Exp. Biol. 213:11 (2010), 1852–1858, 10.1242/jeb.041947.
Claes, J.M., Aksnes, D.L., Mallefet, J., Phantom hunter of the fjords: camouflage by counterillumination in a shark (Etmopterus spinax). J. Exp. Mar. Biol. Ecol. 388:1 (2010), 28–32, 10.1016/j.jembe.2010.03.009.
Claes, J.M., Krönström, J., Holmgren, S., Mallefet, J., Nitric oxide in the control of luminescence from lantern shark (Etmopterus spinax)photophores. J. Exp. Biol. 213:17 (2010), 3005–3011, 10.1242/jeb.040410.
Claes, J.M., Krönström, J., Holmgren, S., Mallefet, J., GABA inhibition of luminescence from lantern shark (Etmopterus spinax)photophores. Comp. Biochem. Physiol. C Toxicol. Pharmacol. 153:2 (2011), 231–236, 10.1016/j.cbpc.2010.11.002.
Claes, J.M., Ho, H.C., Mallefet, J., Control of luminescence from pygmy shark (Squaliolus aliae)photophores. J. Exp. Biol. 215:10 (2012), 1691–1699, 10.1242/jeb.066704.
Claes, J.M., Dean, M.N., Nilsson, D.E., Hart, N.S., Mallefet, J., A deepwater fish with ‘lightsabers’–dorsal spine-associated luminescence in a counterilluminating lanternshark. Sci. Rep., 3, 2013, 1308, 10.1038/srep01308.
Daims, H., Brühl, A., Amann, R., Schleifer, K.H., Wagner, M., The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set. Sys. Appl. Microbiol. 22:3 (1999), 434–444, 10.1016/S0723-2020(99)80053-8.
Duchatelet, L., Claes, J.M., Mallefet, J., Embryonic expression of encephalopsin supports bioluminescence perception in lanternshark photophores. Mar. Biol., 166, 2019, 21, 10.1007/s00227-019-3473-9.
Dunlap, P.V., Physiological and morphological state of the symbiotic bacteria from light organs of ponyfish. Biol. Bull. 167:2 (1984), 410–425, 10.2307/1541286.
Dunlap, P.V., Biochemistry and genetics of bacterial bioluminescence. Bioluminescence: Fundamentals and Applications in Biotechnology, Vol. 1, 2014, Springer, Berlin, Heidelberg, 37–64, 10.1007/978-3-662-43385-0_2.
Dunlap, P.V., Ast, J.C., Kimura, S., Fukui, A., Yoshino, T., Endo, H., Phylogenetic analysis of host–symbiont specificity and codivergence in bioluminescent symbioses. Cladistics 23:5 (2007), 507–532, 10.1111/j.1096-0031.2007.00157.x.
Dunlap, P.V., Takami, M., Wakatsuki, S., Hendry, T.A., Sezaki, K., Fukui, A., Inception of bioluminescent symbiosis in early developmental stages of the deep-sea fish, Coelorinchus kishinouyei(Gadiformes: Macrouridae). Ichthyol. Res. 61:1 (2014), 59–67, 10.1007/s10228-013-0374-7.
Fukui, A., Takami, M., Tsuchiya, T., Sezaki, K., Igarashi, Y., Kinoshita, S., Watabe, S., Pelagic eggs and larvae ofCoelorinchus kishinouyei (Gadiformes: Macrouridae)collected from Suruga Bay, Japan. Ichtyol. Res. 57:2 (2010), 169–179, 10.1007/s10228-009-0144-8.
Gould, A.L., Dougan, K.E., Koenigbauer, S.T., Dunlap, P.V., Life history of the symbiotically luminous cardinal fish Siphamia tubifer (Perciformes: Apogonidae). J. Fish Biol. 89:2 (2016), 1359–1377, 10.1111/jfb.13063.
Haddock, S.H., Moline, M.A., Case, J.F., Bioluminescence in the sea. Ann. Rev. Mar. Sci. 2:1 (2010), 443–493, 10.1146/annurev-marine-120308-081028.
Haneda, Y., Tsuji, F.I., Light production in the luminous fishes Photoblepharon and Anomalops from the Banda Islands. Science 173:3992 (1971), 143–145, 10.1126/science.173.3992.143.
Haygood, M.G., Light organ symbiosis in fishes. Crit. Rev. Microbiol. 19 (1993), 191–216, 10.3109/10408419309113529.
Hendry, T.A., de Wet, J.R., Dunlap, P.V., Genomic signatures of obligate host dependence in the luminous bacterial symbiont of a vertebrate. Environ. Microbiol. 16:8 (2014), 2611–2622, 10.1111/1462-2920.12302.
Hendry, T.A., Freed, L.L., Fader, D., Fenolio, D., Sutton, T.T., Lopez, J.V., Ongoing transposon-mediated genome reduction in the luminous bacterial symbionts of deep-sea ceratioid anglerfishes. mBio 9 (2018), e01033–18, 10.1128/mBio.01033-18.
Herring, P.J., Aspects of the bioluminescence of fishes. Oceanogr. Mar. Biol. 20 (1982), 415–470.
Herring, P.J., Tenuous evidence for the luminous mouthed shark. Nature, 318(6043), 1985, 238, 10.1038/318238b0.
Kaeding, A.J., Ast, J.C., Pearce, M.M., Urbanczyk, H., Kimura, S., Endo, H., Nakamura, M., Dunlap, P.V., Phylogenetic diversity and cosymbiosis in the bioluminescent symbioses of “Photobacterium mandapamensis”. Appl. Environ. Microbiol. 73:10 (2007), 3173–3182, 10.1128/AEM.02212-06.
Krönström, J., Holmgren, S., Baguet, F., Salpietro, L., Mallefet, J., Nitric oxide in control of luminescence from hatchetfish (Argyropelecus hemigymnus)photophores. J. Exp. Biol. 208:15 (2005), 2951–2961, 10.1242/jeb.01712.
Loy, A., Horn, M., Wagner, M., probeBase: an online resource for rRNA-targeted oligonucleotide probes. Nucleic Acids Res. 31:1 (2003), 514–516, 10.1093/nar/gkg016.
Mallefet, J., Duchatelet, L., Hermans, C., Baguet, F., Luminescence control of Stomiidae photophores. Acta Histochem. 121 (2019), 7–15, 10.1016/j.acthis.2018.10.001.
Nakaya, K., Biology of the megamouth shark, Megachasma pelagios (Lamniformes: Megachasmidae). Proceedings of an International Symposium—Into The Unknown, Researching Mysterious Deep-Sea Animals, 2010, 69–83.
Nealson, K.H., Hastings, J.W., Bacterial bioluminescence: its control and ecological significance. Microbiol. Rev., 43(4), 1979, 496.
Paitio, J., Oba, Y., Meyer-Rochow, V.B., Bioluminescent Fishes and their Eyes, Luminescence - An Outlook on the Phenomena and their Applications, 2, 2016, In Tech, 297–332, 10.5772/65385.
Pietsch, T.W., Bioluminescence and luring. Oceanic Anglerfishes: Extraordinary Diversity in the Deep Sea, 2009, University of California Press, 229–252.
Renwart, M., Mallefet, J., First study of the chemistry of the luminous system in a deep-sea shark, Etmopterus spinaxLinnaeus, 1758 (Chondrichtyes: Etmopteridae). J. Exp. Mar. Biol. Ecol. 448 (2013), 214–219, 10.1016/j.jembe.2013.07.010.
Renwart, M., Delroisse, J., Flammang, P., Claes, J.M., Mallefet, J., Cytological changes during luminescence production in lanternshark (Etmopterus spinax Linnaeus, 1758)photophores. Zoomorphology 134:1 (2015), 107–116, 10.1007/s00435-014-0235-6.
Ruby, E.G., Asato, L.M., Growth and flagellation of Vibrio fischeri during initiation of the sepiolid squid light organ symbiosis. Arch. Microbiol. 159 (1993), 160–167, 10.1007/BF00250277.
Ruby, E.G., McFall-Ngai, M.J., A squid that glows in the night: development of an animal-bacterial mutualism. J. Bacteriol. 174 (1992), 4865–4870, 10.1128/jb.174.15.4865-4870.1992.
Ruby, E.G., Nealson, K.H., Symbiotic association of Photobacterium fischeri with the marine luminous fish Monocentris japonica: a model of symbiosis based on bacterial studies. Biol. Bull. 151:3 (1976), 574–586, 10.2307/1540507.
Straube, N., Li, C., Claes, J.M., Corrigan, S., Naylor, G.J., Molecular phylogeny of Squaliformes and first occurrence of bioluminescence in sharks. BMC Evol. Biol., 15(1), 2015, 162, 10.1186/s12862-015-0446-6.
Taylor, L.R., Compagno, L.J.V., Struhsaker, P.J., Megamouth-a new species, genus, and family of lamnoid shark (Megachasma pelagios, family Megachasmidae)from the Hawaiian Islands. Calif. Acad. Sci. Proc. 43 (1983), 87–110.
Tebo, B.M., Linthicum, D.S., Nealson, K.H., Luminous bacteria and light emitting fish: ultrastructure of the symbiosis. Biosystems 11:4 (1979), 269–280, 10.1016/0303-2647(79)90027-3.
Wada, M., Azuma, N., Mizuno, N., Kurokura, H., Transfer of symbiotic luminous bacteria from parental Leiognathus nuchalis to their offspring. Mar. Biol. 135:4 (1999), 683–687, 10.1007/s002270050669.
Wallner, G., Amann, R., Beisker, W., Optimizing fluorescent in situ hybridization with rRNA‐targeted oligonucleotide probes for flow cytometric identification of microorganisms. Cytometry A 14:2 (1993), 136–143, 10.1002/cyto.990140205.
Widder, E.A., Bioluminescence in the ocean: origins of biological, chemical, and ecological diversity. Science 328:5979 (2010), 704–708, 10.1126/science.1174269.
Yasaki, Y., On the nature of the luminescence of the knight‐fish (Monocentris japonicus (Houttuyn)). J. Exp. Zool. 50:3 (1928), 495–505, 10.1002/jez.1400500307.
Zaccone, G., Abelli, L., Salpietro, L., Zaccone, D., Macrì, B., Marino, F., Nervous control of photophores in luminescent fishes. Acta Histochem. 113:4 (2011), 387–394, 10.1016/j.acthis.2010.03.007.
