Hallenbeck, P.C., (eds.) Modern Topics in the Phototrophic Prokaryotes: Environmental and Applied Aspects, 2017, Springer.
Capson-Tojo, G., et al. Purple phototrophic bacteria for resource recovery: challenges and opportunities. Biotechnol. Adv., 43, 2020, 10756.
Alloul, A., et al. Purple bacteria as added-value protein ingredient in shrimp feed: Penaeus vannamei growth performance, and tolerance against Vibrio and ammonia stress. Aquaculture, 530, 2021, 735788.
Wambacq, E., et al. Aerobes and phototrophs as microbial organic fertilizers: exploring mineralization, fertilization and plant protection features. PLoS One, 17, 2022, e0262497.
Hülsen, T., et al. Low temperature treatment of domestic wastewater by purple phototrophic bacteria: performance, activity, and community. Water Res. 100 (2016), 537–545.
Blansaer, N., et al. Aggregation of purple bacteria in an upflow photobioreactor to facilitate solid/liquid separation: impact of organic loading rate, hydraulic retention time and water composition. Bioresour. Technol., 348, 2022, 126806.
Hülsen, T., et al. Outdoor demonstration-scale flat plate photobioreactor for resource recovery with purple phototrophic bacteria. Water Res., 216, 2022, 118327.
Alloul, A., et al. Cocultivating aerobic heterotrophs and purple bacteria for microbial protein in sequential photo- and chemotrophic reactors. Bioresour. Technol., 319, 2021, 124192.
De Meur, Q., et al. Genetic plasticity and ethylmalonyl coenzyme A pathway during acetate assimilation in Rhodospirillum rubrum S1H under photoheterotrophic conditions. Appl. Environ. Microbiol., 84, 2018, e02038-17.
Puyol, D., et al. A mechanistic model for anaerobic phototrophs in domestic wastewater applications: photo-anaerobic model (PAnM). Water Res. 116 (2017), 241–253.
Cerruti, M., et al. Enrichment and aggregation of purple non-sulfur bacteria in a mixed-culture sequencing-batch photobioreactor for biological nutrient removal from wastewater. Front. Bioeng. Biotechnol., 8, 2020, 557234.
Bayon-Vicente, G., et al. Analysis of the involvement of the isoleucine biosynthesis pathway in photoheterotrophic metabolism of Rhodospirillum rubrum. Front. Microbiol., 12, 2021, 731976.
Bayon-Vicente, G., et al. Global proteomic analysis reveals high light intensity adaptation strategies and polyhydroxyalkanoate production in Rhodospirillum rubrum cultivated with acetate as carbon source. Front. Microbiol., 11, 2020, 464.
Montiel-Corona, V., Buitrón, G., Polyhydroxyalkanoates from organic waste streams using purple non-sulfur bacteria. Bioresour. Technol., 323, 2021, 124610.
Kleerebezem, R., van Loosdrecht, M.C., A generalized method for thermodynamic state analysis of environmental systems. Crit. Rev. Environ. Sci. Technol. 40 (2010), 1–54.
Alloul, A., et al. Capture–ferment–upgrade: a three-step approach for the valorization of sewage organics as commodities. Environ. Sci. Technol. 52 (2018), 6729–6742.
Alloul, A., et al. Volatile fatty acids impacting phototrophic growth kinetics of purple bacteria: paving the way for protein production on fermented wastewater. Water Res. 152 (2019), 138–147.
Alloul, A., et al. Unlocking the genomic potential of aerobes and phototrophs for the production of nutritious and palatable microbial food without arable land or fossil fuels. Microb. Biotechnol. 15 (2022), 6–12.
Spanoghe, J., et al. Microbial food from light, carbon dioxide and hydrogen gas: kinetic, stoichiometric and nutritional potential of three purple bacteria. Bioresour. Technol., 337, 2021, 125364.
Laguna, R., et al. Acetate-dependent photoheterotrophic growth and the differential requirement for the Calvin–Benson–Bassham reductive pentose phosphate cycle in Rhodobacter sphaeroides and Rhodopseudomonas palustris. Arch. Microbiol. 193 (2011), 151–154.
Leroy, B., et al. New insight into the photoheterotrophic growth of the isocytrate lyase-lacking purple bacterium Rhodospirillum rubrum on acetate. Microbiology 161 (2015), 1061–1072.
Cerruti, M., et al. Effects of light/dark diel cycles on the photoorganoheterotrophic metabolism of Rhodopseudomonas palustris for differential electron allocation to PHAs and H2. bioRxiv, 2020 Published online August 21, 2020 https://doi.org/10.1101/2020.08.19.258533.
Cabello Bergillos, F., Cultivo en biorreactores de Rhodospirillum rubrum en condiciones fotoheterotróficas. 2008, Universitat Autònoma de Barcelona.
Linder, T., Making the case for edible microorganisms as an integral part of a more sustainable and resilient food production system. Food Secur. 11 (2019), 265–278.
De Vrieze, J., et al. The hydrogen gas bio-based economy and the production of renewable building block chemicals, food and energy. New Biotechnol. 55 (2020), 12–18.
Stokes, J.E., Hoare, D.S., Reductive pentose cycle and formate assimilation in Rhodopseudomonas palustris. J. Bacteriol. 100 (1969), 890–894.
Wilson, S.M., et al. Identification of proteins involved in formaldehyde metabolism by Rhodobacter sphaeroides. Microbiology, 154, 2008, 296.
Douthit, H.A., Pfennig, N., Isolation and growth rates of methanol utilizing Rhodospirillaceae. Arch. Microbiol. 107 (1976), 233–234.
Basak, N., et al. Photofermentative molecular biohydrogen production by purple-non-sulfur (PNS) bacteria in various modes: the present progress and future perspective. Int. J. Hydrogen. Energ. 39 (2014), 6853–6871.
Cabecas Segura, P., et al. Effects of mixing volatile fatty acids as carbon sources on Rhodospirillum rubrum carbon metabolism and redox balance mechanisms. Microorganisms, 9, 2021, 1996.
Sali, S., Mackey, H.R., The application of purple non-sulfur bacteria for microbial mixed culture polyhydroxyalkanoates production. Rev. Environ. Sci. Biotechnol. 20 (2021), 959–983.
Masepohl, B., Regulation of nitrogen fixation in photosynthetic purple nonsulfur bacteria. Hallenbeck, P.C., (eds.) Modern Topics in the Phototrophic Prokaryotes, 2017, Springer, 1–25.
van Niel, C.B., Muller, F., On the purple bacteria and their significance for the study of photosynthesis. Recueil Trav. Bot. Néerl. 28 (1931), 245–274.
Hallenbeck, P.L., et al. Phosphoribulokinase activity and regulation of CO2 fixation critical for photosynthetic growth of Rhodobacter sphaeroides. J. Bacteriol. 172 (1990), 1749–1761.
Falcone, D.L., Tabita, F.R., Complementation analysis and regulation of CO2 fixation gene expression in a ribulose 1,5-bisphosphate carboxylase-oxygenase deletion strain of Rhodospirillum rubrum. J. Bacteriol. 175 (1993), 5066–5077.
Erb, T.J., et al. Synthesis of C5-dicarboxylic acids from C2-units involving crotonyl-CoA carboxylase/reductase: the ethylmalonyl-CoA pathway. Proc. Natl. Acad. Sci. 104 (2007), 10631–10636.
Erb, T.J., et al. The apparent malate synthase activity of Rhodobacter sphaeroides is due to two paralogous enzymes, (3S)-malyl-coenzyme A (CoA)/β-methylmalyl-CoA lyase and (3S)-malyl-CoA thioesterase. J. Bacteriol. 192 (2010), 1249–1258.
Shimizu, T., et al. Introduction of glyoxylate bypass increases hydrogen gas yield from acetate and L-glutamate in Rhodobacter sphaeroides. Appl. Environ. Microbiol., 85, 2019, e01873-01818.
Gordon, G.C., McKinlay, J.B., Calvin cycle mutants of photoheterotrophic purple nonsulfur bacteria fail to grow due to an electron imbalance rather than toxic metabolite accumulation. J. Bacteriol. 196 (2014), 1231–1237.
Joshi, H.M., Tabita, F.R., A global two component signal transduction system that integrates the control of photosynthesis, carbon dioxide assimilation, and nitrogen fixation. Proc. Natl. Acad. Sci. 93 (1996), 14515–14520.
Tichi, M.A., Tabita, F.R., Maintenance and control of redox poise in Rhodobacter capsulatus strains deficient in the Calvin–Benson–Bassham pathway. Arch. Microbiol. 174 (2000), 322–333.
Hädicke, O., et al. Metabolic network modeling of redox balancing and biohydrogen production in purple nonsulfur bacteria. BMC Syst. Biol. 5 (2011), 1–18.
Hauf, W., et al. Metabolic changes in Synechocystis PCC6803 upon nitrogen-starvation: excess NADPH sustains polyhydroxybutyrate accumulation. Metabolites 3 (2013), 101–118.
Brandl, H., et al. The accumulation of poly (3-hydroxyalkanoates) in Rhodobacter sphaeroides. Arch. Microbiol. 155 (1991), 337–340.
Cabecas Segura, P., et al. Study of the production of poly (hydroxybutyrate-co-hydroxyhexanoate) and poly (hydroxybutyrate-co-hydroxyvalerate-co-hydroxy hexanoate) in Rhodospirillum rubrum. Appl. Environ. Microbiol., 88, 2022, e0158621.
Bayon-Vicente, G., et al. Photoheterotrophic assimilation of valerate and associated polyhydroxyalkanoate production by Rhodospirillum rubrum. Appl. Environ. Microbiol. 86 (2020), e00901–e00920.
De Meur, Q., et al. New perspectives on butyrate assimilation in Rhodospirillum rubrum S1H under photoheterotrophic conditions. BMC Microbiol. 20 (2020), 1–20.
Joshi, H.M., Tabita, F.R., Induction of carbon monoxide dehydrogenase to facilitate redox balancing in a ribulose bisphosphate carboxylase/oxygenase-deficient mutant strain of Rhodospirillum rubrum. Arch. Microbiol. 173 (2000), 193–199.
McCully, A.L., et al. Reductive tricarboxylic acid cycle enzymes and reductive amino acid synthesis pathways contribute to electron balance in a Rhodospirillum rubrum Calvin-cycle mutant. Microbiology 166 (2020), 199–211.
Richardson, D.J., et al. The role of auxiliary oxidants in maintaining redox balance during phototrophic growth of Rhodobacter capsulatus on propionate or butyrate. Arch. Microbiol. 150 (1988), 131–137.
Sajitz, P., et al. Isolation and properties of trimethylamine N-oxide/dimethylsulfoxide reductase from the purple bacterium Rhodospirillum rubrum. Z. Naturforsch. C 48 (1993), 812–814.
Rizk, M.L., et al. Redox homeostasis phenotypes in RubisCO-deficient Rhodobacter sphaeroides via ensemble modeling. Biotechnol. Prog. 27 (2011), 15–22.
Hartsock, A., Shapleigh, J.P., Physiological roles for two periplasmic nitrate reductases in Rhodobacter sphaeroides 2.4. 3 (ATCC 17025). J. Bacteriol. 193 (2011), 6483–6489.
Siefert, E., Pfennig, N., Chemoautotrophic growth of Rhodopseudomonas species with hydrogen and chemotrophic utilization of methanol and formate. Arch. Microbiol. 122 (1979), 177–182.
Quayle, J., Pfennig, N., Utilization of methanol by Rhodospirillaceae. Arch. Microbiol. 102 (1975), 193–198.
Fradinho, J., et al. Photosynthetic mixed culture polyhydroxyalkanoate (PHA) production from individual and mixed volatile fatty acids (VFAs): substrate preferences and co-substrate uptake. J. Biotechnol. 185 (2014), 19–27.
Eady, R.R., Structure−function relationships of alternative nitrogenases. Chem. Rev. 96 (1996), 3013–3030.
Luxem, K.E., et al. Carbon substrate re-orders relative growth of a bacterium using Mo-, V-, or Fe-nitrogenase for nitrogen fixation. Environ. Microbiol. 24 (2022), 2170–2176.
Machado, D., et al. Fast automated reconstruction of genome-scale metabolic models for microbial species and communities. Nucleic Acids Res. 46 (2018), 7542–7553.
Chowdhury, N.B., et al. Characterizing the interplay of rubisco and nitrogenase enzymes in anaerobic-photoheterotrophically grown Rhodopseudomonas palustris CGA009 through a genome-scale metabolic and expression model. bioRxiv, 2022 Published online March 4, 2022 https://doi.org/10.1101/2022.03.03.482919.
Alsiyabi, A., et al. Modeling the interplay between photosynthesis, CO2 fixation, and the quinone pool in a purple non-sulfur bacterium. Sci. Rep. 9 (2019), 1–9.
Alsiyabi, A., et al. Synergistic experimental and computational approach identifies novel strategies for polyhydroxybutyrate overproduction. Metab. Eng. 68 (2021), 1–13.
Delamare-Deboutteville, J., et al. Mixed culture purple phototrophic bacteria is an effective fishmeal replacement in aquaculture. Water Res. X, 4, 2019, 100031.
Alloul, A., et al. Operational strategies to selectively produce purple bacteria for microbial protein in raceway reactors. Environ. Sci. Technol. 55 (2021), 8278–8286.
Fernández, F.A., et al. Costs analysis of microalgae production. Biofuels from Algae, 2019, Elsevier, 551–566.
Oostlander, P., et al. Microalgae production cost in aquaculture hatcheries. Aquaculture, 525, 2020, 735310.
Tan, D., et al. Grand challenges for industrializing polyhydroxyalkanoates (PHAs). Trends Biotechnol. 39 (2021), 953–963.
Kayfeci, M., et al. Hydrogen production. Calise, F., et al. (eds.) Solar Hydrogen Production, 2019, Elsevier, 45–83.
Metcalf, et al. Wastewater Engineering: Treatment and Resource Recovery. 2014, McGraw Hill Education.
Blankenship, R.E., Early evolution of photosynthesis. Plant Physiol. 154 (2010), 434–438.
Imhoff, J.F., The phototrophic alpha-proteobacteria. Dworkin, M., et al. (eds.) The Prokaryotes, 2006, Springer-Verlag, 41–64.
Hunter, C.N., et al. (eds.) The Purple Phototrophic Bacteria, 28, 2008, Springer.
Herter, S.M., et al. Complex I of Rhodobacter capsulatus and its role in reverted electron transport. Arch. Microbiol. 169 (1998), 98–105.
Tichi, M.A., et al. Complex I and its involvement in redox homeostasis and carbon and nitrogen metabolism in Rhodobacter capsulatus. J. Bacteriol. 183 (2001), 7285–7294.
Verméglio, A., Joliot, P., Modulation of the redox state of quinones by light in Rhodobacter sphaeroides under anaerobic conditions. Photosynth. Res. 120 (2014), 237–246.
Klamt, S., et al. Modeling the electron transport chain of purple non-sulfur bacteria. Mol. Syst. Biol., 4, 2008, 156.