Article (Scientific journals)
Enumeration, measurement, and identification of net zooplankton samples using the ZOOSCAN digital imaging system
Grosjean, Philippe; Picheral, M.; Warembourg, C. et al.
2004In ICES Journal of Marine Science, 61 (4), p. 518-525
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Keywords :
[en] size spectrum; [en] long-term series; [en] pattern recognition; [en] zooplankton; [en] machine learning; [en] net samples; [en] image analysis
Abstract :
[en] Identifying and counting zooplankton are labour-intensive and time-consuming processes that are still performed manually. However, a new system, known as ZOOSCAN, has been designed for counting zooplankton net samples. We describe image-processing and the results of (semi)-automatic identification of taxa with various machine-learning methods. Each scan contains between 1500 and 2000 individuals !0.5 mm. We used two training sets of about 1000 objects each divided into 8 (simplified) and 29 groups (detailed), respectively. The new discriminant vector forest algorithm, which is one of the most efficient methods, discriminates between the organisms in the detailed training set with an accuracy of 75% at a speed of 2000 items per second. A supplementary algorithm tags objects that the method classified with low accuracy (suspect items), such that they could be checked by taxonomists. This complementary and interactive semi-automatic process combines both computer speed and the ability to detect variations in proportions and grey levels with the human skills to discriminate animals on the basis of small details, such as presence/absence or number of appendages. After this checking process, total accuracy increases to between 80% and 85%. We discuss the potential of the system as a standard for identification, enumeration, and size frequency distribution of net-collected zooplankton.
Disciplines :
Phytobiology (plant sciences, forestry, mycology...)
Mathematics
Author, co-author :
Grosjean, Philippe  ;  Université de Mons > Faculté des Sciences > Service d'Ecologie numérique
Picheral, M.
Warembourg, C.
Gorsky, G.
Language :
English
Title :
Enumeration, measurement, and identification of net zooplankton samples using the ZOOSCAN digital imaging system
Publication date :
01 January 2004
Journal title :
ICES Journal of Marine Science
ISSN :
1054-3139
Publisher :
Oxford University Press, United Kingdom
Volume :
61
Issue :
4
Pages :
518-525
Peer reviewed :
Peer Reviewed verified by ORBi
Research unit :
S807 - Ecologie numérique
Research institute :
R150 - Institut de Recherche sur les Systèmes Complexes
R100 - Institut des Biosciences
Commentary :
ISSN: 1095-9289
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